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Installation

It is advisable but not required that you install Napari Lattice packages inside a conda environment. This is because conda makes it much easier to install system complex dependencies.

To install the core package, which includes the Python library and command line interface:

pip install lls-core

To install the Napari plugin:

pip install napari-lattice

CUDA Deconvolution

If you have access to a CUDA-compatible GPU, you can enable deconvolution using pycudadecon.

If you're using conda (or micromamba etc), you can run the following:

conda install -c conda-forge pycudadecon

Otherwise, you will have to manually ensure the systems dependencies are installed, and then:

pip install lls-core[deconvolution]

Development Versions

To install the development version of lls-core:

pip install git+https://github.com/BioimageAnalysisCoreWEHI/napari_lattice.git#subdirectory=core

For napari-lattice:

pip install git+https://github.com/BioimageAnalysisCoreWEHI/napari_lattice.git#subdirectory=plugin